Survival-associated meQTLs across different cancer types


We identified 23,432 meQTLs associated with patient overall survival across different cancer types at FDR < 0.05.


e.g., "BLCA"
e.g., "rs11600543"


Cancer type
SNP ID
SNP position (hg19)
Alleles (A/a)
log-rank test p-value
Sample size
Median survival time AA
Median survival time Aa
Median survival time aa
Dispaly
STAD rs73096374 chr1:227445096 G/A 0 404 14.25 14.45 1.48 KM Plot
STAD rs73099023 chr1:227290987 C/A 0 405 14.37 14.15 1.48 KM Plot
STAD rs73099026 chr1:227291760 T/C 0 405 14.37 14.15 1.48 KM Plot
STAD rs73100804 chr1:227298607 G/C 0 405 14.37 14.15 1.48 KM Plot
STAD rs73102915 chr1:227322676 T/C 0 405 14.37 14.15 1.48 KM Plot
STAD rs73102920 chr1:227324813 T/C 0 405 14.37 14.15 1.48 KM Plot
STAD rs73102930 chr1:227329044 A/C 0 405 14.37 14.15 1.48 KM Plot
STAD rs73102936 chr1:227330951 T/C 0 405 14.37 14.15 1.48 KM Plot
STAD rs73169129 chr7:155620704 A/G 3.34E-5 386 14.27 15.43 12.65 KM Plot
STAD rs73263981 chr17:28920502 A/G 1.55E-5 400 14.22 16.53 9.8 KM Plot
STAD rs73263982 chr17:28920624 T/C 1.66E-5 403 14.2 16.53 9.8 KM Plot
STAD rs7413768 chr1:227325972 T/C 0 405 14.37 14.15 1.48 KM Plot
STAD rs74140276 chr1:227257166 A/C 0 406 14.27 14.23 1.48 KM Plot
STAD rs74429761 chr1:227337175 T/C 0 404 14.47 14.07 1.48 KM Plot
STAD rs74482667 chr10:95472198 C/G 2.64E-5 401 13.97 18.6 6.1 KM Plot